Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3091Hypothetical protein. (237 aa)    
Predicted Functional Partners:
THII_3853
Hypothetical protein.
  
     0.763
THII_0370
Hypothetical protein.
  
     0.762
THII_1315
Hypothetical protein.
  
     0.759
THII_0371
Hypothetical protein.
  
     0.753
THII_0372
Hypothetical protein.
  
     0.751
THII_3174
Hypothetical protein.
  
     0.689
THII_0935
Exonuclease RNase T and DNA polymerase III.
  
     0.497
THII_1681
Hypothetical protein.
  
     0.482
THII_3951
Hypothetical protein.
  
     0.465
THII_3029
Hypothetical protein.
  
     0.417
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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