STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_3095General secretion pathway protein, ATPase. (438 aa)    
Predicted Functional Partners:
THII_3096
MSHA biogenesis protein MshL.
 
  
 0.662
THII_2766
Hypothetical protein.
 
     0.547
THII_2767
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
     0.539
THII_2765
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
 
     0.528
THII_3930
Type IV pilus assembly protein PilO.
 
     0.528
THII_3094
Fis family transcriptional regulator.
 
     0.491
THII_3569
Toluene tolerance protein.
 
     0.463
THII_1018
Hypothetical protein.
 
     0.457
aroB
3-dehydroquinate synthase; Catalyzes the conversion of 3-deoxy-D-arabino-heptulosonate 7-phosphate (DAHP) to dehydroquinate (DHQ).
  
    0.456
THII_0590
General secretion pathway protein C.
 
  
 0.447
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.