Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
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[Homology]
Score
THII_3120Sugar transferase. (196 aa)    
Predicted Functional Partners:
THII_3119
Polysaccharide biosynthesis protein CapD.
  
 0.943
THII_3121
DegT/DnrJ/EryC1/StrS aminotransferase; Belongs to the DegT/DnrJ/EryC1 family.
 
  
 0.909
THII_3123
Group 1 glycosyl transferase.
  
 0.909
THII_0639
UDP-N-acetyl-D-mannosamine transferase; Belongs to the glycosyltransferase 26 family.
    
 0.907
THII_0798
Capsular exopolysaccharide biosynthesis protein.
 
  
 0.794
THII_3122
Hypothetical protein.
       0.773
THII_2476
Bacterial sugar transferase.
 
     0.772
THII_3057
Mannose-1-phosphate guanyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.763
THII_1327
Chain length determinant protein.
 
  
 0.753
THII_0799
Protein involved in polysaccharide export.
 
  
 0.532
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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