Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3126Ferredoxin. (118 aa)    
Predicted Functional Partners:
THII_3125
NifQ family protein.
 
 0.978
THII_3797
Ferritin-like protein.
    0.930
THII_1524
NADP oxidoreductase.
  
 
 0.917
THII_3127
Ferredoxin IV.
 
     0.917
nifH
Nitrogenase iron protein; The key enzymatic reactions in nitrogen fixation are catalyzed by the nitrogenase complex, which has 2 components: the iron protein and the molybdenum-iron protein; Belongs to the NifH/BchL/ChlL family.
  
 
 0.856
THII_3128
Flavodoxin/nitric oxide synthase.
 
  
 0.833
THII_3130
Nitrogenase cofactor biosynthesis protein NifB.
 
  
 0.815
THII_1817
Nitrogen fixation protein.
 
  
 0.798
THII_1808
Nitrogenase molybdenum-iron protein beta chain; This molybdenum-iron protein is part of the nitrogenase complex that catalyzes the key enzymatic reactions in nitrogen fixation; Belongs to the NifD/NifK/NifE/NifN family.
 
 
 0.789
THII_3085
Nitrogen fixation protein NifZ.
 
     0.785
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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