STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_3126Ferredoxin. (118 aa)    
Predicted Functional Partners:
THII_1524
NADP oxidoreductase.
  
 
 0.984
THII_3125
NifQ family protein.
 
 0.976
THII_2208
Polyketide synthase.
  
 
 0.945
THII_3797
Ferritin-like protein.
  
 0.930
THII_3127
Ferredoxin IV.
 
     0.905
THII_3128
Flavodoxin/nitric oxide synthase.
 
  
 0.824
THII_3130
Nitrogenase cofactor biosynthesis protein NifB.
 
  
 0.806
THII_3129
Hypothetical protein.
 
 
 0.784
THII_3085
Nitrogen fixation protein NifZ.
 
    0.783
THII_1817
Nitrogen fixation protein.
 
    0.780
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.