Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
THII_3127Ferredoxin IV. (95 aa)    
Predicted Functional Partners:
THII_3128
Flavodoxin/nitric oxide synthase.
 
  
 0.947
THII_3125
NifQ family protein.
 
 0.937
THII_1524
NADP oxidoreductase.
  
 
 0.917
THII_3126
Ferredoxin.
 
     0.917
THII_3130
Nitrogenase cofactor biosynthesis protein NifB.
 
  
 0.864
THII_3129
Hypothetical protein.
  
 
 0.846
THII_2208
Polyketide synthase.
  
 0.780
THII_3087
Hypothetical protein.
  
     0.753
THII_3085
Nitrogen fixation protein NifZ.
 
     0.726
iscS
Aminotransferase, class V; Master enzyme that delivers sulfur to a number of partners involved in Fe-S cluster assembly, tRNA modification or cofactor biosynthesis. Catalyzes the removal of elemental sulfur atoms from cysteine to produce alanine. Functions as a sulfur delivery protein for Fe-S cluster synthesis onto IscU, an Fe-S scaffold assembly protein, as well as other S acceptor proteins.
  
 0.709
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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