Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3142O-antigen polymerase. (520 aa)    
Predicted Functional Partners:
THII_0798
Capsular exopolysaccharide biosynthesis protein.
 
  
 0.851
THII_0800
Hypothetical protein.
 
     0.799
THII_1327
Chain length determinant protein.
 
  
 0.784
THII_0799
Protein involved in polysaccharide export.
 
  
 0.717
THII_3057
Mannose-1-phosphate guanyltransferase; Belongs to the mannose-6-phosphate isomerase type 2 family.
  
  
 0.628
THII_1539
Undecaprenyl-phosphate glucose phosphotransferase.
  
  
 0.596
THII_0535
Sigma-70 region 4 domain-containing protein.
  
   
 0.536
THII_1326
Capsular polysaccharide export protein.
 
  
 0.527
THII_0276
Clostripain.
 
     0.504
THII_2842
Hypothetical protein.
  
     0.428
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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