STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_3146ABC nitrate/nitrite/cyanate family transporter, periplasmic ligand binding protein. (332 aa)    
Predicted Functional Partners:
THII_3962
Twin-arginine translocation pathway signal.
  
     0.763
THII_1778
Anaerobic dehydrogenase; Belongs to the prokaryotic molybdopterin-containing oxidoreductase family. NasA/NapA/NarB subfamily.
 
  
 0.759
THII_3961
Twin-arginine translocation pathway signal.
  
     0.756
THII_3963
Twin-arginine translocation pathway signal.
  
     0.748
THII_2176
Chemotaxis protein CheW.
 
      0.630
THII_1785
Chemotaxis protein CheY.
 
  
 0.583
THII_3145
Signal transduction histidine kinase.
       0.561
THII_1782
Nitrite reductase; Belongs to the nitrite and sulfite reductase 4Fe-4S domain family.
 
  
 0.512
THII_1985
Hypothetical protein.
  
     0.475
THII_3144
Nitrate/sulfonate/bicarbonate ABC transporter periplasmic protein-like protein.
       0.453
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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