Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3157Hypothetical protein. (853 aa)    
Predicted Functional Partners:
THII_0688
Transglutaminase-like enzyme, predicted cysteine protease.
 
  
 0.883
THII_1509
Hypothetical protein.
 
   
0.752
THII_1510
Hypothetical protein.
 
   
0.710
THII_0772
Transglutaminase domain-containing protein.
 
  
 0.541
THII_3156
Squalene/phytoene synthase.
       0.533
THII_0969
Transglutaminase-like enzyme, predicted cysteine protease.
  
  
 0.459
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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