Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
speAArginine decarboxylase; Catalyzes the biosynthesis of agmatine from arginine. (631 aa)    
Predicted Functional Partners:
THII_0351
Peptidylarginine deiminase; Belongs to the agmatine deiminase family.
 
  
 0.949
argH
Argininosuccinate lyase.
     
 0.821
speE
Spermidine synthase; Catalyzes the irreversible transfer of a propylamine group from the amino donor S-adenosylmethioninamine (decarboxy-AdoMet) to putrescine (1,4-diaminobutane) to yield spermidine.
    
 0.786
THII_3185
U32 family peptidase.
       0.718
THII_3187
Competence/damage-inducible protein CinA domain protein; Belongs to the CinA family.
       0.664
THII_0353
N-carbamoylputrescine amidase.
 
  
 0.522
THII_0234
Aminotransferase, class III.
      
 0.487
THII_3188
Hypothetical protein.
       0.428
THII_1367
Hypothetical protein.
 
   
 0.422
THII_3586
Malonyl CoA-ACP transacylase.
   
    0.412
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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