Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3308GCN5-like N-acetyltransferase. (161 aa)    
Predicted Functional Partners:
THII_3307
Hypothetical protein.
      0.976
THII_3309
Hypothetical protein.
       0.757
THII_3306
Hypothetical protein.
       0.642
THII_3305
Hypothetical protein.
       0.567
THII_3310
RuBisCO operon transcriptional regulator; Belongs to the LysR transcriptional regulatory family.
     
 0.566
THII_3304
Hypothetical protein.
  
    0.545
THII_3387
Prephenate dehydratase.
     
 0.475
argG
Argininosuccinate synthase; Belongs to the argininosuccinate synthase family. Type 1 subfamily.
  
  
 0.473
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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