Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
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empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
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Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
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from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
THII_3312Ribulose bisphosphate carboxylase, small chain. (119 aa)    
Predicted Functional Partners:
cbbL
Ribulose bisphosphate carboxylase form I, large chain; RuBisCO catalyzes two reactions: the carboxylation of D- ribulose 1,5-bisphosphate, the primary event in carbon dioxide fixation, as well as the oxidative fragmentation of the pentose substrate. Both reactions occur simultaneously and in competition at the same active site; Belongs to the RuBisCO large chain family. Type I subfamily.
 
 0.998
THII_0770
Phosphoribulokinase.
 
 
 0.980
THII_1875
Ribulose bisphosphate carboxylase-like protein.
 
 
 0.948
THII_3701
Phosphoglycolate phosphatase; Specifically catalyzes the dephosphorylation of 2- phosphoglycolate. Is involved in the dissimilation of the intracellular 2-phosphoglycolate formed during the DNA repair of 3'-phosphoglycolate ends, a major class of DNA lesions induced by oxidative stress. Belongs to the HAD-like hydrolase superfamily. CbbY/CbbZ/Gph/YieH family.
    
 0.911
pgk
Phosphoglycerate kinase; Belongs to the phosphoglycerate kinase family.
    
 0.910
THII_3430
Hydrolase.
    
 0.903
THII_3031
Von Willebrand factor type A.
 
   
 0.778
THII_0273
Hypothetical protein.
 
     0.724
THII_1611
Anhydrase.
    
 
 0.700
THII_3206
HAD-superfamily hydrolase.
 
   
 0.673
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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