Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3375RloA protein. (444 aa)    
Predicted Functional Partners:
THII_1727
Hypothetical protein.
   
    0.736
THII_1764
Hypothetical protein.
 
     0.609
THII_0276
Clostripain.
  
     0.580
THII_3376
Hypothetical protein.
       0.520
THII_0535
Sigma-70 region 4 domain-containing protein.
  
     0.484
THII_3530
Type I restriction enzyme StySPI M protein.
 
    0.471
THII_0905
Subtilisin-like serine protease.
  
     0.432
THII_0011
Hypothetical protein.
  
     0.417
THII_0010
ASPIC/UnbV domain-containing protein.
  
     0.416
THII_0509
Type I restriction-modification system methyltransferase subunit.
  
    0.400
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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