THII_3384 protein (Thioploca ingrica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THII_3384

Mannonate dehydratase. (419 aa)

Predicted Functional Partners:

THII_0535

0.700

THII_0879

0.645

THII_0276

0.644

THII_1879

0.642

THII_0905

0.601

THII_3067

0.571

THII_3385

0.504

THII_3383

0.481

THII_0910

0.455

THII_3420

0.436

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
THII_0276	THII_0535	Clostripain.	Sigma-70 region 4 domain-containing protein.	0.772
THII_0276	THII_0879	Clostripain.	ABC transporter ATP-binding protein.	0.748
THII_0276	THII_0905	Clostripain.	Subtilisin-like serine protease.	0.756
THII_0276	THII_0910	Clostripain.	Sporulation related protein.	0.499
THII_0276	THII_1879	Clostripain.	Hypothetical protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.	0.753
THII_0276	THII_3067	Clostripain.	Histidine kinase.	0.571
THII_0276	THII_3384	Clostripain.	Mannonate dehydratase.	0.644
THII_0276	THII_3420	Clostripain.	ABC transporter ATP-binding protein, putative.	0.600
THII_0535	THII_0276	Sigma-70 region 4 domain-containing protein.	Clostripain.	0.772
THII_0535	THII_0879	Sigma-70 region 4 domain-containing protein.	ABC transporter ATP-binding protein.	0.768
THII_0535	THII_0905	Sigma-70 region 4 domain-containing protein.	Subtilisin-like serine protease.	0.768
THII_0535	THII_0910	Sigma-70 region 4 domain-containing protein.	Sporulation related protein.	0.647
THII_0535	THII_1879	Sigma-70 region 4 domain-containing protein.	Hypothetical protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.	0.769
THII_0535	THII_3067	Sigma-70 region 4 domain-containing protein.	Histidine kinase.	0.633
THII_0535	THII_3384	Sigma-70 region 4 domain-containing protein.	Mannonate dehydratase.	0.700
THII_0535	THII_3420	Sigma-70 region 4 domain-containing protein.	ABC transporter ATP-binding protein, putative.	0.737
THII_0879	THII_0276	ABC transporter ATP-binding protein.	Clostripain.	0.748
THII_0879	THII_0535	ABC transporter ATP-binding protein.	Sigma-70 region 4 domain-containing protein.	0.768
THII_0879	THII_0905	ABC transporter ATP-binding protein.	Subtilisin-like serine protease.	0.662
THII_0879	THII_1879	ABC transporter ATP-binding protein.	Hypothetical protein; RNA chaperone with significant RNA binding, RNA strand exchange and RNA duplexing activities; Belongs to the ProQ family.	0.710