STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_3511D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family. (342 aa)    
Predicted Functional Partners:
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
  
 0.936
THII_0903
D-Ala-D-Ala carboxypeptidase.
     
 0.927
THII_3927
Penicillin-binding protein, 1A family.
     
 0.921
mrdB
Cell cycle protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
 
  
 0.830
THII_3509
Hypothetical protein; Belongs to the UPF0250 family.
  
    0.820
THII_3510
D-amino-acid transaminase.
      0.804
THII_1480
ErfK/YbiS/YcfS/YnhG family protein.
 
 
 0.648
leuS
leucyl-tRNA synthetase; Belongs to the class-I aminoacyl-tRNA synthetase family.
 
  
 0.633
THII_3513
Membrane-bound lytic murein transglycosylase B.
 
   
 0.613
THII_0881
Muramoyltetrapeptide carboxypeptidase.
    
 0.568
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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