Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
THII_3513Membrane-bound lytic murein transglycosylase B. (320 aa)    
Predicted Functional Partners:
THII_3512
RlpA-like lipoprotein precursor.
 
   
 0.882
THII_0435
Aldose epimerase; Belongs to the glucose-6-phosphate 1-epimerase family.
 
      0.798
mrdA
Penicillin-binding protein 2; Catalyzes cross-linking of the peptidoglycan cell wall. Belongs to the transpeptidase family. MrdA subfamily.
 
 
 
 0.767
THII_0772
Transglutaminase domain-containing protein.
      0.710
THII_3511
D-alanyl-D-alanine carboxypeptidase; Belongs to the peptidase S11 family.
 
   
 0.678
mrdB
Cell cycle protein; Peptidoglycan polymerase that is essential for cell wall elongation; Belongs to the SEDS family. MrdB/RodA subfamily.
     
 0.650
THII_3509
Hypothetical protein; Belongs to the UPF0250 family.
 
     0.636
THII_3516
Rod shape-determining protein MreD; Involved in formation of the rod shape of the cell. May also contribute to regulation of formation of penicillin-binding proteins. Belongs to the MreD family.
 
     0.565
THII_3510
D-amino-acid transaminase.
     
 0.537
lptD
Organic solvent tolerance protein OstA; Together with LptE, is involved in the assembly of lipopolysaccharide (LPS) at the surface of the outer membrane.
 
   
 0.525
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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