Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
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colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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[Homology]
Score
THII_3546Serine endoprotease; Belongs to the peptidase S1C family. (438 aa)    
Predicted Functional Partners:
THII_0906
ATPase AAA.
    
 0.737
THII_2201
FkbH-like protein; Belongs to the enoyl-CoA hydratase/isomerase family.
  
 0.662
THII_1740
RIP metalloprotease RseP.
 
  
 0.551
THII_1954
Signal transduction histidine kinase.
  
  
 0.541
THII_3545
Hypothetical protein.
  
    0.501
THII_1951
GAF sensor hybrid histidine kinase.
  
  
 0.495
THII_2208
Polyketide synthase.
  
 0.493
rplK
50S ribosomal protein L11; Forms part of the ribosomal stalk which helps the ribosome interact with GTP-bound translation factors.
    
   0.471
THII_2294
PAS domain S-box.
  
  
 0.454
THII_0750
Signal transduction histidine kinase.
  
  
 0.453
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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