Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3549Hypothetical protein. (350 aa)    
Predicted Functional Partners:
THII_3550
Hypothetical protein.
 
    
0.568
THII_1478
Hypothetical protein.
  
     0.565
THII_0831
Hypothetical protein.
  
     0.563
THII_3551
Hypothetical protein.
 
     0.549
THII_3475
Hypothetical protein.
  
     0.548
THII_3837
Amino acid-binding protein.
  
     0.520
THII_2467
ATPase.
  
     0.484
THII_3554
FeoA family protein.
 
     0.478
THII_1826
Surface lipoprotein.
    
 
 0.477
THII_3821
Hypothetical protein; Belongs to the peptidase S24 family.
  
     0.440
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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