Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3575Hypothetical protein. (428 aa)    
Predicted Functional Partners:
THII_3576
Hypothetical protein.
 
   
 0.950
THII_3577
Asparagine synthase.
       0.773
THII_0225
Hypothetical protein.
  
  
 0.562
THII_3574
Putative Mg2+ and Co2+ transporter, CorA-like protein.
       0.546
THII_0085
Hypothetical protein.
 
     0.539
THII_1452
Bacteriocin biosynthesis cyclodehydratase domain-containing protein.
  
     0.512
THII_1453
TIM-barrel fold metal-dependent hydrolase.
  
     0.501
THII_3172
Hypothetical protein.
  
     0.496
THII_3578
Hypothetical protein.
       0.493
THII_0011
Hypothetical protein.
  
     0.491
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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