THII_3639 protein (Thioploca ingrica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THII_3639

Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs). (522 aa)

Predicted Functional Partners:

THII_3641

0.986

THII_3640

0.773

THII_3642

0.773

tatC

0.755

tatB

0.744

THII_3547

0.489

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
THII_3547	THII_3639	THII_3547	THII_3639	Octaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).	0.489
THII_3547	THII_3641	THII_3547	THII_3641	Octaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.	Glucosyl transferase.	0.489
THII_3639	THII_3547	THII_3639	THII_3547	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).	Octaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.	0.489
THII_3639	THII_3640	THII_3639	THII_3640	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).	Hypothetical protein.	0.773
THII_3639	THII_3641	THII_3639	THII_3641	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).	Glucosyl transferase.	0.986
THII_3639	THII_3642	THII_3639	THII_3642	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).	Aminopeptidase.	0.773
THII_3639	tatB	THII_3639	THII_1340	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).	Twin arginine translocase protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.	0.744
THII_3639	tatC	THII_3639	THII_1341	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).	Twin arginine targeting protein translocase subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.	0.755
THII_3640	THII_3639	THII_3640	THII_3639	Hypothetical protein.	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).	0.773
THII_3640	THII_3641	THII_3640	THII_3641	Hypothetical protein.	Glucosyl transferase.	0.773
THII_3640	THII_3642	THII_3640	THII_3642	Hypothetical protein.	Aminopeptidase.	0.773
THII_3641	THII_3547	THII_3641	THII_3547	Glucosyl transferase.	Octaprenyl diphosphate synthase; Belongs to the FPP/GGPP synthase family.	0.489
THII_3641	THII_3639	THII_3641	THII_3639	Glucosyl transferase.	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).	0.986
THII_3641	THII_3640	THII_3641	THII_3640	Glucosyl transferase.	Hypothetical protein.	0.773
THII_3641	THII_3642	THII_3641	THII_3642	Glucosyl transferase.	Aminopeptidase.	0.773
THII_3642	THII_3639	THII_3642	THII_3639	Aminopeptidase.	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).	0.773
THII_3642	THII_3640	THII_3642	THII_3640	Aminopeptidase.	Hypothetical protein.	0.773
THII_3642	THII_3641	THII_3642	THII_3641	Aminopeptidase.	Glucosyl transferase.	0.773
tatB	THII_3639	THII_1340	THII_3639	Twin arginine translocase protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.	Glucan biosynthesis protein D; Involved in the biosynthesis of osmoregulated periplasmic glucans (OPGs).	0.744
tatB	tatC	THII_1340	THII_1341	Twin arginine translocase protein TatB; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatC, TatB is part of a receptor directly interacting with Tat signal peptides. TatB may form an oligomeric binding site that transiently accommodates folded Tat precursor proteins before their translocation.	Twin arginine targeting protein translocase subunit TatC; Part of the twin-arginine translocation (Tat) system that transports large folded proteins containing a characteristic twin- arginine motif in their signal peptide across membranes. Together with TatB, TatC is part of a receptor directly interacting with Tat signal peptides.	0.999