THII_3690 protein (Thioploca ingrica) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Knowledge-based Evidence

from curated databases

textmining

Assay-based Predictions

experimentally determined

co-expression

Genomic Predictions

gene neighborhood

gene co-occurrence

gene fusions

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

THII_3690

NADPH-dependent glutamate synthase beta chain - like protein. (565 aa)

Predicted Functional Partners:

THII_3728

0.999

THII_1524

0.995

THII_0118

0.968

THII_0527

0.963

THII_3693

0.960

THII_3694

0.957

THII_3692

0.954

THII_1303

0.919

THII_1523

0.911

THII_0587

0.900

Your Current Organism:

Thioploca ingrica

NCBI taxonomy Id: 40754
Other names: T. ingrica

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of proteins in your network

Browse interactions in tabular form:

node1	node2	node1 annotation	node2 annotation	score
THII_0118	THII_3690	Glutamate synthase, domain 2.	NADPH-dependent glutamate synthase beta chain - like protein.	0.968
THII_0118	THII_3728	Glutamate synthase, domain 2.	Glutamate synthase.	0.912
THII_0527	THII_1303	NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	CDP-6-deoxy-delta-3,4-glucoseen reductase.	0.506
THII_0527	THII_1523	NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	Hydrogen dehydrogenase.	0.991
THII_0527	THII_1524	NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	NADP oxidoreductase.	0.915
THII_0527	THII_3690	NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	NADPH-dependent glutamate synthase beta chain - like protein.	0.963
THII_0587	THII_3690	Formylmethanofuran dehydrogenase subunit C.	NADPH-dependent glutamate synthase beta chain - like protein.	0.900
THII_1303	THII_0527	CDP-6-deoxy-delta-3,4-glucoseen reductase.	NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	0.506
THII_1303	THII_1524	CDP-6-deoxy-delta-3,4-glucoseen reductase.	NADP oxidoreductase.	0.952
THII_1303	THII_3690	CDP-6-deoxy-delta-3,4-glucoseen reductase.	NADPH-dependent glutamate synthase beta chain - like protein.	0.919
THII_1523	THII_0527	Hydrogen dehydrogenase.	NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	0.991
THII_1523	THII_1524	Hydrogen dehydrogenase.	NADP oxidoreductase.	0.999
THII_1523	THII_3690	Hydrogen dehydrogenase.	NADPH-dependent glutamate synthase beta chain - like protein.	0.911
THII_1523	THII_3728	Hydrogen dehydrogenase.	Glutamate synthase.	0.538
THII_1524	THII_0527	NADP oxidoreductase.	NADH-quinone oxidoreductase subunit F; NDH-1 shuttles electrons from NADH, via FMN and iron-sulfur (Fe-S) centers, to quinones in the respiratory chain. Belongs to the complex I 51 kDa subunit family.	0.915
THII_1524	THII_1303	NADP oxidoreductase.	CDP-6-deoxy-delta-3,4-glucoseen reductase.	0.952
THII_1524	THII_1523	NADP oxidoreductase.	Hydrogen dehydrogenase.	0.999
THII_1524	THII_3690	NADP oxidoreductase.	NADPH-dependent glutamate synthase beta chain - like protein.	0.995
THII_1524	THII_3692	NADP oxidoreductase.	Pyruvate:ferredoxin oxidoreductase, beta subunit.	0.419
THII_1524	THII_3693	NADP oxidoreductase.	Pyruvate:ferredoxin oxidoreductase, alpha subunit.	0.422