Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3738Nitrogen fixation protein NifM. (303 aa)    
Predicted Functional Partners:
THII_3085
Nitrogen fixation protein NifZ.
   
 0.876
THII_1809
Nitrogen fixation protein NifT.
 
   
 0.658
THII_2571
PAS/PAC sensor signal transduction histidine kinase.
  
 
   0.637
THII_3736
Phosphoglycerate/bisphosphoglycerate mutase; Belongs to the phosphoglycerate mutase family.
       0.618
guaA
Bifunctional GMP synthase/glutamine amidotransferase protein; Catalyzes the synthesis of GMP from XMP.
       0.618
THII_3087
Hypothetical protein.
 
 
   0.604
THII_3125
NifQ family protein.
 
  
 0.601
nifW
Nitrogen fixation protein NifW; May protect the nitrogenase Fe-Mo protein from oxidative damage; Belongs to the NifW family.
 
   
 0.569
THII_1811
NifY protein.
  
   
 0.563
THII_1761
PpiC-type peptidyl-prolyl cis-trans isomerase.
  
     0.535
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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