Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3786Hypothetical protein. (290 aa)    
Predicted Functional Partners:
THII_2080
TPR repeat containing protein.
  
 
   0.739
THII_3788
Hypothetical protein.
 
 
  
0.616
THII_3789
Hypothetical protein.
 
    
0.606
THII_3787
Ketosteroid isomerase.
       0.512
THII_3785
Hypothetical protein.
       0.511
THII_3140
WD40 repeat-containing protein.
  
     0.463
THII_1058
G-protein beta WD-40 repeat.
  
     0.452
THII_3139
Serine/threonine protein kinase with WD40 repeats.
  
     0.450
THII_1574
TIR domain-containing protein.
  
     0.442
THII_2996
WD repeat-containing protein.
  
     0.440
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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