Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
THII_3903Hypothetical protein. (380 aa)    
Predicted Functional Partners:
THII_3905
biotin-(acetyl-CoA carboxylase) ligase.
       0.825
coaX
Transcriptional regulator; Catalyzes the phosphorylation of pantothenate (Pan), the first step in CoA biosynthesis.
     
 0.796
THII_1284
Hypothetical protein.
  
     0.730
THII_2379
Hypothetical protein.
  
     0.678
THII_3857
Diguanylate cyclase (GGDEF) domain-containing protein.
  
     0.666
THII_3067
Histidine kinase.
  
     0.664
THII_1986
Chemotaxis signal transduction protein.
  
     0.644
THII_1194
Hypothetical protein.
  
     0.614
THII_2074
Prepilin-type N-terminal cleavage/methylation domain-containing protein.
  
     0.599
THII_1601
Hypothetical protein.
  
     0.578
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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