STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_3910Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily. (538 aa)    
Predicted Functional Partners:
THII_1393
Peptide ABC transporter permease.
  
 0.985
THII_0681
Binding-protein-dependent transporters inner membrane component.
  
 0.984
THII_0682
Glutathione ABC transporter permease.
  
 0.981
THII_1392
ABC transporter permease.
  
 0.901
THII_1390
Peptide ABC transporter substrate-binding protein.
 
  
 0.826
THII_3911
Diguanylate cyclase/phosphodiesterase.
       0.741
THII_2736
Mannose-1-phosphate guanyltransferase.
 
      0.642
THII_2692
Peptide ABC transporter substrate-binding protein.
 
  
 0.628
lpxL
Lipid A biosynthesis acyltransferase; Catalyzes the transfer of laurate from lauroyl-acyl carrier protein (ACP) to Kdo(2)-lipid IV(A) to form Kdo(2)-(lauroyl)-lipid IV(A).
       0.528
THII_3114
Hypothetical protein.
 
 
    0.490
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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