STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
THII_3911Diguanylate cyclase/phosphodiesterase. (702 aa)    
Predicted Functional Partners:
THII_1777
Signal transduction histidine kinase.
 
 
    0.846
THII_2693
Diguanylate cyclase.
 
 
 0.826
THII_1583
Adenylate/guanylate cyclase.
 
      0.772
THII_2433
Ammonium transporter.
 
      0.754
THII_1541
Diguanylate cyclase.
 
     0.744
THII_3910
Peptide ABC transporter, ATP-binding protein; Belongs to the ABC transporter superfamily.
       0.741
THII_2963
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.704
THII_1913
PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein.
 
 
0.700
THII_0444
Signal transduction histidine kinase.
 
      0.655
THII_2053
Diguanylate cyclase with PAS/PAC and GAF sensors.
 
0.632
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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