Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
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Neighborhood
Gene Fusion
Co-occurrence
Co-expression
Experiments
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[Homology]
Score
THII_3950Phage shock protein A (IM30), suppresses sigma54-dependent transcription. (225 aa)    
Predicted Functional Partners:
THII_3951
Hypothetical protein.
 
     0.848
THII_0331
PAS domain S-box.
    
 
 0.830
THII_0636
Signal transduction histidine kinase.
    
 
 0.830
THII_2440
Multi-sensor hybrid histidine kinase.
    
 
 0.830
THII_2472
Hypothetical protein.
  
  
 0.753
THII_2168
Signal transduction histidine kinase.
    
 
 0.628
THII_1036
Signal transduction histidine kinase.
    
 
 0.607
THII_3834
Sensory transduction histidine kinase.
    
 
 0.602
THII_1020
Signal transduction histidine kinase.
    
 
 0.589
THII_1365
PAS/PAC sensor hybrid histidine kinase.
    
 
 0.589
Your Current Organism:
Thioploca ingrica
NCBI taxonomy Id: 40754
Other names: T. ingrica
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