X975_07578 protein (Stegodyphus mimosarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

X975_07578

E3 ubiquitin-protein ligase listerin. (682 aa)

Predicted Functional Partners:

X975_02060

0.938

X975_00442

0.776

X975_16292

0.771

X975_19282

0.760

X975_07057

0.760

X975_03305

0.729

X975_20012

0.728

X975_10430

0.705

X975_15859

0.680

X975_24529

0.678

Your Current Organism:

Stegodyphus mimosarum

NCBI taxonomy Id: 407821
Other names: S. mimosarum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
X975_00442	X975_02060	A0A087UMC7	A0A087TT21	60S ribosomal protein L6.	Nuclear export mediator factor Nemf.	0.870
X975_00442	X975_07578	A0A087UMC7	A0A087TDS2	60S ribosomal protein L6.	E3 ubiquitin-protein ligase listerin.	0.776
X975_00442	X975_10430	A0A087UMC7	A0A087T216	60S ribosomal protein L6.	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.999
X975_00442	X975_15859	A0A087UMC7	A0A087U2C7	60S ribosomal protein L6.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.999
X975_00442	X975_16292	A0A087UMC7	A0A087U0P7	60S ribosomal protein L6.	Ubiquitin-60S ribosomal protein L40.	0.999
X975_00442	X975_20012	A0A087UMC7	A0A087UZ58	60S ribosomal protein L6.	Transcription factor 25.	0.583
X975_00442	X975_24529	A0A087UMC7	A0A087T1K5	60S ribosomal protein L6.	Uncharacterized protein.	0.463
X975_02060	X975_00442	A0A087TT21	A0A087UMC7	Nuclear export mediator factor Nemf.	60S ribosomal protein L6.	0.870
X975_02060	X975_07578	A0A087TT21	A0A087TDS2	Nuclear export mediator factor Nemf.	E3 ubiquitin-protein ligase listerin.	0.938
X975_02060	X975_10430	A0A087TT21	A0A087T216	Nuclear export mediator factor Nemf.	60S ribosomal protein L23a; Belongs to the universal ribosomal protein uL23 family.	0.934
X975_02060	X975_15859	A0A087TT21	A0A087U2C7	Nuclear export mediator factor Nemf.	60S ribosomal protein L11; Belongs to the universal ribosomal protein uL5 family.	0.939
X975_02060	X975_16292	A0A087TT21	A0A087U0P7	Nuclear export mediator factor Nemf.	Ubiquitin-60S ribosomal protein L40.	0.891
X975_02060	X975_20012	A0A087TT21	A0A087UZ58	Nuclear export mediator factor Nemf.	Transcription factor 25.	0.788
X975_02060	X975_24529	A0A087TT21	A0A087T1K5	Nuclear export mediator factor Nemf.	Uncharacterized protein.	0.723
X975_03305	X975_07057	A0A087TYA0	A0A087U1U0	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Putative E3 ubiquitin-protein ligase TRIP12.	0.991
X975_03305	X975_07578	A0A087TYA0	A0A087TDS2	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	E3 ubiquitin-protein ligase listerin.	0.729
X975_03305	X975_16292	A0A087TYA0	A0A087U0P7	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Ubiquitin-60S ribosomal protein L40.	0.782
X975_03305	X975_19282	A0A087TYA0	A0A087TI59	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	Putative E3 ubiquitin-protein ligase TRIP12.	0.991
X975_07057	X975_03305	A0A087U1U0	A0A087TYA0	Putative E3 ubiquitin-protein ligase TRIP12.	E3 ubiquitin-protein ligase; Ubiquitin ligase protein which is a component of the N-end rule pathway. Recognizes and binds to proteins bearing specific N- terminal residues that are destabilizing according to the N-end rule, leading to their ubiquitination and subsequent degradation.	0.991
X975_07057	X975_07578	A0A087U1U0	A0A087TDS2	Putative E3 ubiquitin-protein ligase TRIP12.	E3 ubiquitin-protein ligase listerin.	0.760