Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
MED17 | X975_02522 | A0A087T2S2 | A0A087TK95 | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | RPE-spondin. | 0.807 |
MED17 | X975_10806 | A0A087T2S2 | A0A087UVR1 | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Mediator of RNA polymerase II transcription subunit 30. | 0.995 |
MED17 | X975_12731 | A0A087T2S2 | A0A087T3G1 | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | Uncharacterized protein. | 0.995 |
X975_02522 | MED17 | A0A087TK95 | A0A087T2S2 | RPE-spondin. | Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors. | 0.807 |
X975_02522 | X975_03483 | A0A087TK95 | A0A087TNX4 | RPE-spondin. | Nuclear pore protein. | 0.862 |
X975_02522 | X975_09506 | A0A087TK95 | A0A087TWS5 | RPE-spondin. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.832 |
X975_02522 | X975_10425 | A0A087TK95 | A0A087T211 | RPE-spondin. | Acyl-CoA synthetase family member 4. | 0.873 |
X975_02522 | X975_10427 | A0A087TK95 | A0A087T213 | RPE-spondin. | Acyl-CoA synthetase family member 4. | 0.873 |
X975_02522 | X975_10806 | A0A087TK95 | A0A087UVR1 | RPE-spondin. | Mediator of RNA polymerase II transcription subunit 30. | 0.803 |
X975_02522 | X975_12731 | A0A087TK95 | A0A087T3G1 | RPE-spondin. | Uncharacterized protein. | 0.798 |
X975_02522 | X975_16261 | A0A087TK95 | A0A087TCE8 | RPE-spondin. | Hormone-sensitive lipase. | 0.824 |
X975_02522 | X975_19292 | A0A087TK95 | A0A087SXU6 | RPE-spondin. | Buccalin. | 0.917 |
X975_02522 | X975_24763 | A0A087TK95 | A0A087TQ12 | RPE-spondin. | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | 0.832 |
X975_03483 | X975_02522 | A0A087TNX4 | A0A087TK95 | Nuclear pore protein. | RPE-spondin. | 0.862 |
X975_03483 | X975_19292 | A0A087TNX4 | A0A087SXU6 | Nuclear pore protein. | Buccalin. | 0.999 |
X975_09506 | X975_02522 | A0A087TWS5 | A0A087TK95 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | RPE-spondin. | 0.832 |
X975_09506 | X975_10425 | A0A087TWS5 | A0A087T211 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Acyl-CoA synthetase family member 4. | 0.986 |
X975_09506 | X975_10427 | A0A087TWS5 | A0A087T213 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Acyl-CoA synthetase family member 4. | 0.986 |
X975_09506 | X975_16261 | A0A087TWS5 | A0A087TCE8 | Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis. | Hormone-sensitive lipase. | 0.960 |
X975_10425 | X975_02522 | A0A087T211 | A0A087TK95 | Acyl-CoA synthetase family member 4. | RPE-spondin. | 0.873 |
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