X975_04080 protein (Stegodyphus mimosarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

X975_04080

Integrator complex subunit 7. (91 aa)

Predicted Functional Partners:

X975_08784

0.979

X975_02525

0.978

X975_19770

0.971

X975_19457

0.966

X975_19459

0.966

X975_24337

0.966

X975_24338

0.966

X975_00947

0.933

X975_24806

0.906

X975_24805

0.901

Your Current Organism:

Stegodyphus mimosarum

NCBI taxonomy Id: 407821
Other names: S. mimosarum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
X975_00947	X975_02525	A0A087UHV3	A0A087TK98	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Integrator complex subunit 2.	0.958
X975_00947	X975_04080	A0A087UHV3	A0A087TLY6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Integrator complex subunit 7.	0.933
X975_00947	X975_08784	A0A087UHV3	A0A087U8R6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Integrator complex subunit 1.	0.992
X975_00947	X975_19457	A0A087UHV3	A0A087U3M6	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Integrator complex subunit 5.	0.972
X975_00947	X975_19459	A0A087UHV3	A0A087U3M8	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Integrator complex subunit 5.	0.972
X975_00947	X975_19770	A0A087UHV3	A0A087TBI0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Integrator complex subunit 11.	0.981
X975_00947	X975_24337	A0A087UHV3	A0A087UW13	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Integrator complex subunit 3.	0.971
X975_00947	X975_24338	A0A087UHV3	A0A087UW14	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Uncharacterized protein.	0.971
X975_00947	X975_24805	A0A087UHV3	A0A087UJH9	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Integrator complex subunit 4.	0.925
X975_00947	X975_24806	A0A087UHV3	A0A087UJI0	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	Integrator complex subunit 4.	0.925
X975_02525	X975_00947	A0A087TK98	A0A087UHV3	Integrator complex subunit 2.	DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.	0.958
X975_02525	X975_04080	A0A087TK98	A0A087TLY6	Integrator complex subunit 2.	Integrator complex subunit 7.	0.978
X975_02525	X975_08784	A0A087TK98	A0A087U8R6	Integrator complex subunit 2.	Integrator complex subunit 1.	0.999
X975_02525	X975_19457	A0A087TK98	A0A087U3M6	Integrator complex subunit 2.	Integrator complex subunit 5.	0.990
X975_02525	X975_19459	A0A087TK98	A0A087U3M8	Integrator complex subunit 2.	Integrator complex subunit 5.	0.990
X975_02525	X975_19770	A0A087TK98	A0A087TBI0	Integrator complex subunit 2.	Integrator complex subunit 11.	0.998
X975_02525	X975_24337	A0A087TK98	A0A087UW13	Integrator complex subunit 2.	Integrator complex subunit 3.	0.983
X975_02525	X975_24338	A0A087TK98	A0A087UW14	Integrator complex subunit 2.	Uncharacterized protein.	0.983
X975_02525	X975_24805	A0A087TK98	A0A087UJH9	Integrator complex subunit 2.	Integrator complex subunit 4.	0.976
X975_02525	X975_24806	A0A087TK98	A0A087UJI0	Integrator complex subunit 2.	Integrator complex subunit 4.	0.976

page 1 of 6

Network Stats

number of nodes:

11

number of edges:

51

average node degree:

9.27

avg. local clustering coefficient:

0.952

expected number of edges:

45

PPI enrichment p-value:

0.157

your network does not have significantly more
interactions than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0042128

Nitrate assimilation

2 of 2

2.87

1.01

0.0150

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0008942

Nitrite reductase [NAD(P)H] activity

2 of 2

2.87

1.13

0.0089

GO:0015103

Inorganic anion transmembrane transporter activity

2 of 13

2.06

0.81

0.0309

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:4791

Mixed, incl. Ferredoxin metabolic process, and Nitrate assimilation

6 of 11

2.61

5.45

2.50e-11

CL:4794

Nitrate assimilation, and NADH-rubredoxin oxidoreductase, C-terminal

5 of 5

2.87

5.16

2.33e-10

CL:2614

3-oxoacyl-[acyl-carrier-protein] synthase activity, and Ketoacyl-synthetase C-terminal extension

2 of 11

2.13

0.79

0.0339

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

aori00910

Nitrogen metabolism

6 of 22

2.31

4.92

5.30e-11

aori01120

Microbial metabolism in diverse environments

5 of 344

1.04

0.79

0.0033

aori01100

Metabolic pathways

7 of 1148

0.66

0.46

0.0092

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0009344

Nitrite reductase complex [NAD(P)H]

2 of 2

2.87

1.38

0.0032

Protein Domains (Pfam)

domain

description

count in network

strength

signal

false discovery rate

PF04324

BFD-like [2Fe-2S] binding domain

2 of 3

2.7

1.01

0.0147

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR041854

BFD-like [2Fe-2S]-binding domain superfamily

2 of 3

2.7

0.91

0.0224

IPR041575

NADH-rubredoxin oxidoreductase, C-terminal

2 of 2

2.87

0.91

0.0224

IPR007419

BFD-like [2Fe-2S]-binding domain

2 of 3

2.7

0.91

0.0224

Enrichment display settings

Enrichment analysis is still ongoing, please wait ...

Server load: low (26%) [HD]

Permalink

Credits

Access

Info

About

STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.

Network

Fusion

Experiments

Cooccurrence

Databases

Coexpression

Textmining

Neighborhood

© STRING Consortium 2024

Credits

Access

Info

About