X975_11159 protein (Stegodyphus mimosarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

X975_11159

Hemocyanin F chain. (628 aa)

Predicted Functional Partners:

X975_19292

0.917

X975_10425

0.873

X975_10427

0.873

X975_03483

0.862

X975_08166

0.832

X975_24763

0.832

X975_09506

0.832

X975_16261

0.824

MED17

0.807

X975_10806

0.803

Your Current Organism:

Stegodyphus mimosarum

NCBI taxonomy Id: 407821
Other names: S. mimosarum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
MED17	X975_10806	A0A087T2S2	A0A087UVR1	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Mediator of RNA polymerase II transcription subunit 30.	0.995
MED17	X975_11159	A0A087T2S2	A0A087TPB7	Mediator of RNA polymerase II transcription subunit 17; Component of the Mediator complex, a coactivator involved in the regulated transcription of nearly all RNA polymerase II-dependent genes. Mediator functions as a bridge to convey information from gene- specific regulatory proteins to the basal RNA polymerase II transcription machinery. Mediator is recruited to promoters by direct interactions with regulatory proteins and serves as a scaffold for the assembly of a functional preinitiation complex with RNA polymerase II and the general transcription factors.	Hemocyanin F chain.	0.807
X975_03483	X975_08166	A0A087TNX4	A0A087TCL7	Nuclear pore protein.	Aspartate aminotransferase.	0.736
X975_03483	X975_11159	A0A087TNX4	A0A087TPB7	Nuclear pore protein.	Hemocyanin F chain.	0.862
X975_03483	X975_19292	A0A087TNX4	A0A087SXU6	Nuclear pore protein.	Buccalin.	0.999
X975_08166	X975_03483	A0A087TCL7	A0A087TNX4	Aspartate aminotransferase.	Nuclear pore protein.	0.736
X975_08166	X975_11159	A0A087TCL7	A0A087TPB7	Aspartate aminotransferase.	Hemocyanin F chain.	0.832
X975_08166	X975_16261	A0A087TCL7	A0A087TCE8	Aspartate aminotransferase.	Hormone-sensitive lipase.	0.421
X975_08166	X975_19292	A0A087TCL7	A0A087SXU6	Aspartate aminotransferase.	Buccalin.	0.994
X975_09506	X975_10425	A0A087TWS5	A0A087T211	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acyl-CoA synthetase family member 4.	0.986
X975_09506	X975_10427	A0A087TWS5	A0A087T213	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Acyl-CoA synthetase family member 4.	0.986
X975_09506	X975_11159	A0A087TWS5	A0A087TPB7	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Hemocyanin F chain.	0.832
X975_09506	X975_16261	A0A087TWS5	A0A087TCE8	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	Hormone-sensitive lipase.	0.960
X975_10425	X975_09506	A0A087T211	A0A087TWS5	Acyl-CoA synthetase family member 4.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.986
X975_10425	X975_11159	A0A087T211	A0A087TPB7	Acyl-CoA synthetase family member 4.	Hemocyanin F chain.	0.873
X975_10425	X975_16261	A0A087T211	A0A087TCE8	Acyl-CoA synthetase family member 4.	Hormone-sensitive lipase.	0.555
X975_10425	X975_24763	A0A087T211	A0A087TQ12	Acyl-CoA synthetase family member 4.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.986
X975_10427	X975_09506	A0A087T213	A0A087TWS5	Acyl-CoA synthetase family member 4.	Acyl carrier protein; Carrier of the growing fatty acid chain in fatty acid biosynthesis.	0.986
X975_10427	X975_11159	A0A087T213	A0A087TPB7	Acyl-CoA synthetase family member 4.	Hemocyanin F chain.	0.873
X975_10427	X975_16261	A0A087T213	A0A087TCE8	Acyl-CoA synthetase family member 4.	Hormone-sensitive lipase.	0.555