X975_10398 protein (Stegodyphus mimosarum) - STRING interaction network

Nodes:

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second shell of interactors

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a 3D structure is known or predicted

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

X975_10398

Membrane magnesium transporter 1. (109 aa)

Predicted Functional Partners:

X975_24553

0.984

X975_10428

0.979

X975_09843

0.979

X975_23567

0.976

X975_09229

0.970

X975_20170

0.968

X975_19714

0.964

X975_09139

0.954

X975_19616

0.729

X975_27222

0.515

Your Current Organism:

Stegodyphus mimosarum

NCBI taxonomy Id: 407821
Other names: S. mimosarum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
X975_09139	X975_09843	A0A087UXK7	A0A087UWN2	Transmembrane protein 111.	Tetratricopeptide repeat protein 35.	0.969
X975_09139	X975_10398	A0A087UXK7	A0A087TPY7	Transmembrane protein 111.	Membrane magnesium transporter 1.	0.954
X975_09139	X975_10428	A0A087UXK7	A0A087T214	Transmembrane protein 111.	Uncharacterized protein.	0.959
X975_09139	X975_19616	A0A087UXK7	A0A087U5K6	Transmembrane protein 111.	Translocation protein SEC63-like protein.	0.427
X975_09139	X975_19714	A0A087UXK7	A0A087UXV2	Transmembrane protein 111.	Neighbor of COX4.	0.942
X975_09139	X975_20170	A0A087UXK7	A0A087TNA6	Transmembrane protein 111.	DUF2012 domain-containing protein.	0.963
X975_09139	X975_23567	A0A087UXK7	A0A087US81	Transmembrane protein 111.	Transmembrane protein 85.	0.972
X975_09139	X975_24553	A0A087UXK7	A0A087SVG2	Transmembrane protein 111.	Transmembrane protein 93.	0.962
X975_09229	X975_09843	A0A087T7U1	A0A087UWN2	Transmembrane protein 111.	Tetratricopeptide repeat protein 35.	0.978
X975_09229	X975_10398	A0A087T7U1	A0A087TPY7	Transmembrane protein 111.	Membrane magnesium transporter 1.	0.970
X975_09229	X975_10428	A0A087T7U1	A0A087T214	Transmembrane protein 111.	Uncharacterized protein.	0.970
X975_09229	X975_19616	A0A087T7U1	A0A087U5K6	Transmembrane protein 111.	Translocation protein SEC63-like protein.	0.427
X975_09229	X975_19714	A0A087T7U1	A0A087UXV2	Transmembrane protein 111.	Neighbor of COX4.	0.966
X975_09229	X975_20170	A0A087T7U1	A0A087TNA6	Transmembrane protein 111.	DUF2012 domain-containing protein.	0.977
X975_09229	X975_23567	A0A087T7U1	A0A087US81	Transmembrane protein 111.	Transmembrane protein 85.	0.979
X975_09229	X975_24553	A0A087T7U1	A0A087SVG2	Transmembrane protein 111.	Transmembrane protein 93.	0.971
X975_09843	X975_09139	A0A087UWN2	A0A087UXK7	Tetratricopeptide repeat protein 35.	Transmembrane protein 111.	0.969
X975_09843	X975_09229	A0A087UWN2	A0A087T7U1	Tetratricopeptide repeat protein 35.	Transmembrane protein 111.	0.978
X975_09843	X975_10398	A0A087UWN2	A0A087TPY7	Tetratricopeptide repeat protein 35.	Membrane magnesium transporter 1.	0.979
X975_09843	X975_10428	A0A087UWN2	A0A087T214	Tetratricopeptide repeat protein 35.	Uncharacterized protein.	0.992

page 1 of 5

Network Stats

number of nodes:

11

number of edges:

55

average node degree:

10

avg. local clustering coefficient:

1

expected number of edges:

25

PPI enrichment p-value:

9.09e-08

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006412

Translation

11 of 128

1.69

4.18

7.28e-16

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0019843

rRNA binding

11 of 44

2.15

7.64

8.20e-21

GO:0003735

Structural constituent of ribosome

11 of 57

2.04

6.81

5.26e-20

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005840

Ribosome

11 of 60

2.01

6.72

3.27e-20

GO:0015935

Small ribosomal subunit

3 of 8

2.33

2.45

1.91e-05

Reference Publications (PubMed)

publication

(year) title

count in network

strength

signal

false discovery rate

PMID:37185344

(2023) Independent origins and evolution of the secondary replicons of the class Gammaproteobacteria.

7 of 31

2.11

4.47

8.07e-11

PMID:28083017

(2016) Distribution of Hydrogenases in Cyanobacteria: A Phylum-Wide Genomic Survey.

6 of 20

2.23

4.29

9.18e-10

PMID:26096579

(2015) Neutral red-mediated microbial electrosynthesis by Escherichia coli, Klebsiella pneumoniae, and Zymomonas mobilis.

5 of 49

1.76

2.2

8.48e-06

PMID:37991636

(2023) De novo assembly and comparative genome analysis for polyhydroxyalkanoates-producing Bacillus sp. BNPI-92 strain.

3 of 36

1.67

0.93

0.0127

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:169

Ribosome

11 of 31

2.3

8.83

4.54e-22

CL:209

Small ribosomal subunit, and Ribosome

5 of 11

2.41

4.38

1.92e-09

CL:172

rRNA-binding

5 of 16

2.25

3.92

8.47e-09

CL:211

Small ribosomal subunit, and Ribosomal protein S13-like, H2TH

4 of 5

2.65

3.89

4.47e-08

CL:174

rRNA-binding

4 of 11

2.31

3.21

4.60e-07

(more ...)

KEGG Pathways

pathway

description

count in network

strength

signal

false discovery rate

reh03010

Ribosome

11 of 55

2.05

7.06

1.00e-20

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005840

Ribosome

10 of 52

2.04

6.21

1.65e-17

GOCC:0015935

Small ribosomal subunit

6 of 13

2.42

5.42

8.57e-12

GOCC:0044391

Ribosomal subunit

7 of 27

2.17

5.17

2.04e-12

GOCC:0022626

Cytosolic ribosome

5 of 21

2.13

3.68

1.42e-08

GOCC:0022627

Cytosolic small ribosomal subunit

4 of 9

2.4

3.53

1.25e-07

(more ...)

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0699

rRNA-binding

11 of 40

2.19

8.13

8.94e-22

KW-0689

Ribosomal protein

11 of 55

2.05

7.06

1.01e-20

KW-0820

tRNA-binding

2 of 17

1.82

0.84

0.0239

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