X975_25493 protein (Stegodyphus mimosarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

X975_25493

Sorting nexin-12. (168 aa)

Predicted Functional Partners:

X975_24816

0.997

X975_24140

0.988

X975_25097

0.985

X975_21251

0.984

X975_13168

0.982

X975_03601

0.883

X975_16853

0.644

X975_01189

0.626

X975_16883

0.626

X975_17879

0.626

Your Current Organism:

Stegodyphus mimosarum

NCBI taxonomy Id: 407821
Other names: S. mimosarum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
X975_01189	X975_25493	A0A087TKD9	A0A087TS37	Ribosomal protein S6 kinase alpha-5.	Sorting nexin-12.	0.626
X975_03601	X975_25493	A0A087V0P6	A0A087TS37	Ubiquitin carboxyl-terminal hydrolase 10.	Sorting nexin-12.	0.883
X975_13168	X975_16853	A0A087URV3	A0A087SV30	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Hepatocyte growth factor-regulated tyrosine kinase substrate.	0.424
X975_13168	X975_21251	A0A087URV3	A0A087UDE8	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Vacuolar protein sorting-associated protein 35.	0.991
X975_13168	X975_24140	A0A087URV3	A0A087U0V8	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Protein wntless.	0.885
X975_13168	X975_24816	A0A087URV3	A0A087TQ77	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Vacuolar protein sorting-associated protein 26B-like protein.	0.999
X975_13168	X975_25097	A0A087URV3	A0A087U1X2	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Vacuolar protein sorting-associated protein 35.	0.991
X975_13168	X975_25493	A0A087URV3	A0A087TS37	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	Sorting nexin-12.	0.982
X975_16853	X975_13168	A0A087SV30	A0A087URV3	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.424
X975_16853	X975_21251	A0A087SV30	A0A087UDE8	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Vacuolar protein sorting-associated protein 35.	0.629
X975_16853	X975_24816	A0A087SV30	A0A087TQ77	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Vacuolar protein sorting-associated protein 26B-like protein.	0.476
X975_16853	X975_25097	A0A087SV30	A0A087U1X2	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Vacuolar protein sorting-associated protein 35.	0.618
X975_16853	X975_25493	A0A087SV30	A0A087TS37	Hepatocyte growth factor-regulated tyrosine kinase substrate.	Sorting nexin-12.	0.644
X975_16883	X975_25493	A0A087TSB5	A0A087TS37	Ribosomal protein S6 kinase 2 alpha.	Sorting nexin-12.	0.626
X975_17879	X975_25493	A0A087UYR9	A0A087TS37	Ribosomal protein S6 kinase 2 alpha.	Sorting nexin-12.	0.626
X975_21251	X975_13168	A0A087UDE8	A0A087URV3	Vacuolar protein sorting-associated protein 35.	Vacuolar protein sorting-associated protein 29; Acts as component of the retromer cargo-selective complex (CSC). The CSC is believed to be the core functional component of retromer or respective retromer complex variants acting to prevent missorting of selected transmembrane cargo proteins into the lysosomal degradation pathway.	0.991
X975_21251	X975_16853	A0A087UDE8	A0A087SV30	Vacuolar protein sorting-associated protein 35.	Hepatocyte growth factor-regulated tyrosine kinase substrate.	0.629
X975_21251	X975_24140	A0A087UDE8	A0A087U0V8	Vacuolar protein sorting-associated protein 35.	Protein wntless.	0.819
X975_21251	X975_24816	A0A087UDE8	A0A087TQ77	Vacuolar protein sorting-associated protein 35.	Vacuolar protein sorting-associated protein 26B-like protein.	0.991
X975_21251	X975_25097	A0A087UDE8	A0A087U1X2	Vacuolar protein sorting-associated protein 35.	Vacuolar protein sorting-associated protein 35.	0.964