STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
X975_18191Transcription initiation factor IIB. (43 aa)    
Predicted Functional Partners:
X975_25988
Uncharacterized protein.
    
 0.994
X975_07552
DNA-directed RNA polymerases I, II, and III subunit RPABC1.
    
 0.985
X975_25546
General transcription factor IIE subunit 1.
    
 0.985
X975_14902
Transcription initiation factor IIF subunit alpha; TFIIF is a general transcription initiation factor that binds to RNA polymerase II and helps to recruit it to the initiation complex in collaboration with TFIIB. It promotes transcription elongation. Belongs to the TFIIF alpha subunit family.
    
 0.985
X975_03384
DNA excision repair protein haywire.
    
 0.984
X975_05628
DNA-directed RNA polymerase II subunit RPB3.
    
 0.984
X975_22514
DNA-directed RNA polymerase II subunit RPB7.
   
 0.984
X975_08277
Transcription initiation factor IIA subunit 2.
   
 0.983
X975_24751
DNA-directed RNA polymerase II subunit RPB4.
    
 0.983
X975_00947
DNA-directed RNA polymerase subunit beta; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates.
    
 0.983
Your Current Organism:
Stegodyphus mimosarum
NCBI taxonomy Id: 407821
Other names: S. mimosarum
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