X975_23014 protein (Stegodyphus mimosarum) - STRING interaction network

Nodes:

Network nodes represent proteins

splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.

Node Color

colored nodes:
query proteins and first shell of interactors

white nodes:
second shell of interactors

Node Content

empty nodes:
proteins of unknown 3D structure

filled nodes:
a 3D structure is known or predicted

Edges:

Edges represent protein-protein associations

associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.

Known Interactions

from curated databases

experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

Neighborhood

Gene Fusion

Cooccurrence

Coexpression

Experiments

Databases

Textmining

[Homology]

Score

X975_23014

Uncharacterized protein. (389 aa)

Predicted Functional Partners:

X975_20254

0.984

X975_00901

0.953

X975_05167

0.953

X975_05778

0.744

X975_17080

0.726

X975_02695

0.706

X975_03304

0.706

X975_26226

0.706

X975_06374

0.702

X975_09778

0.695

Your Current Organism:

Stegodyphus mimosarum

NCBI taxonomy Id: 407821
Other names: S. mimosarum

Send network to Cytoscape

Export your current network:

... as a bitmap image:

download

file format is 'PNG': portable network graphic

... as a high-resolution bitmap:

download

same PNG format, but at higher resolution

... as a vector graphic:

download

SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc

... as short tabular text output:

download

TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)

... as tabular text output:

download

TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)

... as an XML summary:

download

structured XML interaction data, according to the 'PSI-MI' data standard

... protein node degrees:

download

node degree of proteins in your network (given the current score cut-off)

... network coordinates:

download

a flat-file format describing the coordinates and colors of nodes in the network

... protein sequences:

download

MFA: multi-fasta format - containing the aminoacid sequences in the network

... protein annotations:

download

a tab-delimited file describing the names, domains and descriptions of proteins in your network

... functional annotations:

download

a tab-delimited file containing all known functional terms of protiens in your network

Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
X975_00901	X975_02695	A0A087T8P6	A0A087TST4	LIM domain-binding protein 2.	Achaete-scute-like protein.	0.670
X975_00901	X975_03304	A0A087T8P6	A0A087TY99	LIM domain-binding protein 2.	Achaete-scute-like protein.	0.670
X975_00901	X975_05778	A0A087T8P6	A0A087T550	LIM domain-binding protein 2.	Endothelial transcription factor GATA-2.	0.818
X975_00901	X975_09778	A0A087T8P6	A0A087V052	LIM domain-binding protein 2.	Protein Fer3.	0.670
X975_00901	X975_17080	A0A087T8P6	A0A087TRE6	LIM domain-binding protein 2.	Pancreas transcription factor 1 subunit alpha.	0.670
X975_00901	X975_20254	A0A087T8P6	A0A087T7D3	LIM domain-binding protein 2.	LIM/homeobox protein Lhx3.	0.947
X975_00901	X975_23014	A0A087T8P6	A0A087U0J8	LIM domain-binding protein 2.	Uncharacterized protein.	0.953
X975_00901	X975_26226	A0A087T8P6	A0A087U9S3	LIM domain-binding protein 2.	Achaete-scute-like protein.	0.670
X975_02695	X975_00901	A0A087TST4	A0A087T8P6	Achaete-scute-like protein.	LIM domain-binding protein 2.	0.670
X975_02695	X975_05167	A0A087TST4	A0A087U0U1	Achaete-scute-like protein.	LIM domain-binding protein 2.	0.670
X975_02695	X975_05778	A0A087TST4	A0A087T550	Achaete-scute-like protein.	Endothelial transcription factor GATA-2.	0.575
X975_02695	X975_23014	A0A087TST4	A0A087U0J8	Achaete-scute-like protein.	Uncharacterized protein.	0.706
X975_03304	X975_00901	A0A087TY99	A0A087T8P6	Achaete-scute-like protein.	LIM domain-binding protein 2.	0.670
X975_03304	X975_05167	A0A087TY99	A0A087U0U1	Achaete-scute-like protein.	LIM domain-binding protein 2.	0.670
X975_03304	X975_05778	A0A087TY99	A0A087T550	Achaete-scute-like protein.	Endothelial transcription factor GATA-2.	0.575
X975_03304	X975_23014	A0A087TY99	A0A087U0J8	Achaete-scute-like protein.	Uncharacterized protein.	0.706
X975_05167	X975_02695	A0A087U0U1	A0A087TST4	LIM domain-binding protein 2.	Achaete-scute-like protein.	0.670
X975_05167	X975_03304	A0A087U0U1	A0A087TY99	LIM domain-binding protein 2.	Achaete-scute-like protein.	0.670
X975_05167	X975_05778	A0A087U0U1	A0A087T550	LIM domain-binding protein 2.	Endothelial transcription factor GATA-2.	0.818
X975_05167	X975_09778	A0A087U0U1	A0A087V052	LIM domain-binding protein 2.	Protein Fer3.	0.670