X975_24485 protein (Stegodyphus mimosarum) - STRING interaction network

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second shell of interactors

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Known Interactions

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experimentally determined

Predicted Interactions

gene neighborhood

gene fusions

gene co-occurrence

Others

textmining

co-expression

protein homology

Your Input:

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[Homology]

Score

X975_24485

Beta-mannosidase. (106 aa)

Predicted Functional Partners:

X975_14108

0.826

X975_15710

0.755

X975_06428

0.743

X975_11250

0.741

X975_13851

0.723

X975_17689

0.723

X975_19753

0.723

X975_16261

0.715

X975_14998

0.711

X975_06983

0.711

Your Current Organism:

Stegodyphus mimosarum

NCBI taxonomy Id: 407821
Other names: S. mimosarum

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Browse interactions in tabular form:

node1	node2	node1 accession	node2 accession	node1 annotation	node2 annotation	score
X975_06428	X975_06983	A0A087UWP4	A0A087TVQ7	Glucosylceramidase.	Beta-galactosidase.	0.866
X975_06428	X975_11250	A0A087UWP4	A0A087T7L4	Glucosylceramidase.	Ceramide glucosyltransferase.	0.912
X975_06428	X975_14998	A0A087UWP4	A0A087TGX8	Glucosylceramidase.	Beta-galactosidase.	0.814
X975_06428	X975_24485	A0A087UWP4	A0A087U2M8	Glucosylceramidase.	Beta-mannosidase.	0.743
X975_06983	X975_06428	A0A087TVQ7	A0A087UWP4	Beta-galactosidase.	Glucosylceramidase.	0.866
X975_06983	X975_11250	A0A087TVQ7	A0A087T7L4	Beta-galactosidase.	Ceramide glucosyltransferase.	0.854
X975_06983	X975_14108	A0A087TVQ7	A0A087UEI6	Beta-galactosidase.	Aldose 1-epimerase.	0.768
X975_06983	X975_24485	A0A087TVQ7	A0A087U2M8	Beta-galactosidase.	Beta-mannosidase.	0.711
X975_11250	X975_06428	A0A087T7L4	A0A087UWP4	Ceramide glucosyltransferase.	Glucosylceramidase.	0.912
X975_11250	X975_06983	A0A087T7L4	A0A087TVQ7	Ceramide glucosyltransferase.	Beta-galactosidase.	0.854
X975_11250	X975_14108	A0A087T7L4	A0A087UEI6	Ceramide glucosyltransferase.	Aldose 1-epimerase.	0.683
X975_11250	X975_14998	A0A087T7L4	A0A087TGX8	Ceramide glucosyltransferase.	Beta-galactosidase.	0.687
X975_11250	X975_24485	A0A087T7L4	A0A087U2M8	Ceramide glucosyltransferase.	Beta-mannosidase.	0.741
X975_13851	X975_14108	A0A087TAD6	A0A087UEI6	UDP-glucose 4-epimerase.	Aldose 1-epimerase.	0.820
X975_13851	X975_15710	A0A087TAD6	A0A087USW1	UDP-glucose 4-epimerase.	Mannose-6-phosphate isomerase.	0.490
X975_13851	X975_17689	A0A087TAD6	A0A087TDC3	UDP-glucose 4-epimerase.	UDP-glucose 4-epimerase.	0.951
X975_13851	X975_24485	A0A087TAD6	A0A087U2M8	UDP-glucose 4-epimerase.	Beta-mannosidase.	0.723
X975_14108	X975_06983	A0A087UEI6	A0A087TVQ7	Aldose 1-epimerase.	Beta-galactosidase.	0.768
X975_14108	X975_11250	A0A087UEI6	A0A087T7L4	Aldose 1-epimerase.	Ceramide glucosyltransferase.	0.683
X975_14108	X975_13851	A0A087UEI6	A0A087TAD6	Aldose 1-epimerase.	UDP-glucose 4-epimerase.	0.820

page 1 of 3

Network Stats

number of nodes:

11

number of edges:

35

average node degree:

6.36

avg. local clustering coefficient:

0.46

expected number of edges:

10

PPI enrichment p-value:

1.13e-09

your network has significantly more interactions
than expected (what does that mean?)

Functional enrichments in your networkNote: some enrichments may be expected here (why?)
disable highlight explain columns

Biological Process (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0006396

RNA processing

6 of 91

1.7

2.37

1.24e-06

GO:0034470

ncRNA processing

5 of 75

1.7

2.06

1.40e-05

GO:0008033

tRNA processing

4 of 56

1.73

1.71

0.00017

GO:0009451

RNA modification

4 of 58

1.72

1.7

0.00017

GO:0006364

rRNA processing

3 of 21

2.03

1.67

0.00050

(more ...)

Molecular Function (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0003723

RNA binding

5 of 134

1.45

1.36

0.00040

GO:0140098

Catalytic activity, acting on RNA

5 of 154

1.39

1.3

0.00040

GO:0008649

rRNA methyltransferase activity

2 of 6

2.4

1.18

0.0068

GO:0051539

4 iron, 4 sulfur cluster binding

3 of 43

1.72

1.13

0.0049

GO:0000049

tRNA binding

2 of 25

1.78

0.8

0.0282

(more ...)

Cellular Component (Gene Ontology)

GO-term

description

count in network

strength

signal

false discovery rate

GO:0005737

Cytoplasm

10 of 1478

0.71

0.64

5.18e-05

Local Network Cluster (STRING)

cluster

description

count in network

strength

signal

false discovery rate

CL:2315

Mixed, incl. tRNA processing, and NusB family

4 of 21

2.16

2.28

3.19e-05

CL:2316

Mixed, incl. NusB family, and Methylthiotransferase

3 of 12

2.28

1.73

0.00053

CL:1849

Translation, and Ribosome biogenesis

5 of 142

1.42

1.3

0.00053

CL:2073

Mixed, incl. TGS-like, and RF-1 domain

2 of 6

2.4

1.02

0.0137

CL:2110

3-5 exonuclease, and S1 domain

2 of 8

2.28

0.94

0.0183

Subcellular Localization (COMPARTMENTS)

compartment

description

count in network

strength

signal

false discovery rate

GOCC:0005829

Cytosol

5 of 399

0.98

0.59

0.0210

GOCC:0005737

Cytoplasm

7 of 1152

0.66

0.43

0.0210

GOCC:0005622

Intracellular

9 of 1930

0.55

0.37

0.0210

Annotated Keywords (UniProt)

keyword

description

count in network

strength

signal

false discovery rate

KW-0698

rRNA processing

3 of 13

2.24

2.15

7.19e-05

KW-0949

S-adenosyl-L-methionine

4 of 52

1.76

1.89

6.65e-05

KW-0963

Cytoplasm

7 of 238

1.35

1.76

1.20e-06

KW-0819

tRNA processing

3 of 28

1.91

1.65

0.00043

KW-0004

4Fe-4S

3 of 39

1.76

1.46

0.00087

Protein Domains and Features (InterPro)

domain

description

count in network

strength

signal

false discovery rate

IPR007197

Radical SAM

3 of 24

1.97

1.06

0.0094

Protein Domains (SMART)

domain

description

count in network

strength

signal

false discovery rate

SM00729

Elongator protein 3, MiaB family, Radical SAM

3 of 18

2.1

1.78

0.00034

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