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STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKV72211.1Transcriptional regulator. (618 aa)    
Predicted Functional Partners:
AKV72210.1
Hypothetical protein.
       0.773
AKG45556.1
ATPase AAA.
  
     0.773
AKG45862.1
Hypothetical protein.
  
     0.766
AKG45861.1
Hypothetical protein.
  
     0.760
AKG41385.1
Microtubule-actin cross-linking factor isoforms 1 2 3 5.
  
     0.753
AKG43997.1
Phage protein.
  
     0.744
AKG45876.1
Membrane protein.
  
     0.723
AKG44384.1
Protein of unknown function (DUF2637).
  
     0.715
AKG45863.1
Protein of unknown function DUF690.
  
     0.708
AKG45354.1
Tetratricopeptide repeat protein.
 
    0.692
Your Current Organism:
Streptomyces xiamenensis
NCBI taxonomy Id: 408015
Other names: CGMCC 4.3534, DSM 41903, JCM 16123, MCCC 1A01550, S. xiamenensis, Streptomyces sp. 1A01550, Streptomyces sp. USC025, Streptomyces sp. USC026, Streptomyces sp. VJPR-24, Streptomyces xiamenensis Xu et al. 2009
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