Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Knowledge-based Evidence
from curated databases
textmining
Assay-based Predictions
experimentally determined
co-expression
Genomic Predictions
gene neighborhood
gene co-occurrence
gene fusions
Your Input:
Neighborhood
Gene fusion
Co-occurrence
Co-expression
Experiments
Databases
Textmining
[Homology]
Score
AKG42187.1Transcriptional regulator. (230 aa)    
Predicted Functional Partners:
AKG42492.1
GntR family transcriptional regulator.
  
  
 0.761
AKG42242.1
Family transcriptional regulator.
  
  
 0.754
AKG46705.1
GntR family transcriptional regulator.
  
  
 0.748
AKG46085.1
GntR family transcriptional regulator.
  
  
 0.746
AKG46600.1
Transcriptional regulator.
  
  
 0.744
AKG42186.1
Integral membrane transporter.
 
     0.650
AKG46148.1
Transcriptional regulator, GntR family.
  
  
 0.648
AKG44286.1
Transcriptional regulator.
  
  
 0.631
AKG42183.1
Phosphohistidine phosphatase.
  
    0.626
AKG46718.1
Transcriptional regulator.
  
  
 0.613
Your Current Organism:
Streptomyces xiamenensis
NCBI taxonomy Id: 408015
Other names: CGMCC 4.3534, DSM 41903, JCM 16123, MCCC 1A01550, S. xiamenensis, Streptomyces sp. 1A01550, Streptomyces sp. USC025, Streptomyces sp. USC026, Streptomyces sp. VJPR-24, Streptomyces xiamenensis Xu et al. 2009
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