STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKG42725.1Mandelate racemase/muconate lactonizing protein. (387 aa)    
Predicted Functional Partners:
AKG46745.1
Galactonate dehydratase.
 
  
 
0.919
AKG42726.1
Dehydrogenase.
 
  
 0.891
AKG42727.1
Hypothetical protein.
 
     0.886
AKG42728.1
Multiple sugar-binding periplasmic family protein.
       0.693
AKG42730.1
Sugar transport permease; Belongs to the binding-protein-dependent transport system permease family.
       0.672
AKG42724.1
Lipoprotein.
       0.576
AKG42742.1
Calcium-binding protein.
 
  
 0.529
AKG42295.1
Glycerophosphodiesterase.
      
 0.514
AKG42743.1
IclR family transcriptional regulator.
 
     0.500
AKG44037.1
Replicative dna helicase; Participates in initiation and elongation during chromosome replication; it exhibits DNA-dependent ATPase activity. Belongs to the helicase family. DnaB subfamily.
  
    0.467
Your Current Organism:
Streptomyces xiamenensis
NCBI taxonomy Id: 408015
Other names: CGMCC 4.3534, DSM 41903, JCM 16123, MCCC 1A01550, S. xiamenensis, Streptomyces sp. 1A01550, Streptomyces sp. USC025, Streptomyces sp. USC026, Streptomyces sp. VJPR-24, Streptomyces xiamenensis Xu et al. 2009
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