STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
AKG46243.1RNA polymerase sigma-70 factor, ECF subfamily. (192 aa)    
Predicted Functional Partners:
AKG46242.1
Anti-sigma-k factor.
 
 
 0.997
AKG46241.1
Deoxyribodipyrimidine photo-lyase; Belongs to the DNA photolyase family.
 
     0.892
AKG46234.1
Cell surface lipoprotein MPT83.
 
  
 0.722
AKG41942.1
RNA polymerase sigma70 factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.674
AKG44835.1
RNA polymerase sigma70; Belongs to the sigma-70 factor family. ECF subfamily.
  
     0.665
AKG44420.1
RNA polymerase, sigma-24 subunit, ECF subfamily; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.648
AKG43938.1
Transcriptional regulator; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.634
AKG46609.1
Rna polymerase sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.614
AKG43967.1
RNA polymerase ECF-subfamily sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.598
AKG44882.1
Sigma factor; Belongs to the sigma-70 factor family. ECF subfamily.
  
   
 0.595
Your Current Organism:
Streptomyces xiamenensis
NCBI taxonomy Id: 408015
Other names: CGMCC 4.3534, DSM 41903, JCM 16123, MCCC 1A01550, S. xiamenensis, Streptomyces sp. 1A01550, Streptomyces sp. USC025, Streptomyces sp. USC026, Streptomyces sp. VJPR-24, Streptomyces xiamenensis Xu et al. 2009
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.