STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SDZ90111.1Glycosyl hydrolases family 43; Belongs to the glycosyl hydrolase 43 family. (349 aa)    
Predicted Functional Partners:
SDZ90094.1
Peptidase family S41.
       0.773
SEA22393.1
Arabinan endo-1,5-alpha-L-arabinosidase.
 
     0.767
araA
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
 
  
 0.758
uxaC
Glucuronate isomerase.
    
 0.725
SDZ96349.1
Beta-xylosidase, GH43 family; Belongs to the glycosyl hydrolase 43 family.
   
 0.718
SDZ96331.1
Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.697
SEA38541.1
Glycosyl hydrolases family 2; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.695
SEA98171.1
Carbohydrate binding module (family 6).
 
  
 0.681
SEA50166.1
L-arabinose isomerase; Catalyzes the conversion of L-arabinose to L-ribulose.
    
 0.680
SDZ95176.1
Glycosyl hydrolases family 2, TIM barrel domain; Belongs to the glycosyl hydrolase 2 family.
  
  
  0.679
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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