STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA01595.1DNA-binding transcriptional regulator, ArsR family. (119 aa)    
Predicted Functional Partners:
SEA01616.1
Glyoxylase, beta-lactamase superfamily II.
 
  
 0.600
SEA04514.1
Tetratricopeptide repeat-containing protein.
  
     0.577
SEA94143.1
Protein of unknown function.
  
     0.498
SEA01575.1
tRNA threonylcarbamoyladenosine biosynthesis protein TsaB.
       0.497
SEA73742.1
OmpA family protein.
  
     0.492
SEA01560.1
3-hydroxybutyryl-CoA dehydrogenase.
       0.470
SDZ92972.1
dCTP deaminase.
  
  
  0.468
SEA31742.1
GLPGLI family protein.
  
     0.434
nadE
NAD+ synthase (glutamine-hydrolysing); Catalyzes the ATP-dependent amidation of deamido-NAD to form NAD. Uses L-glutamine as a nitrogen source.
  
  
  0.432
SEA53069.1
Hypothetical protein.
  
     0.427
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.