STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA05660.1PA domain-containing protein. (457 aa)    
Predicted Functional Partners:
SEA05709.1
Hypothetical protein.
       0.737
SEA02678.1
Peptidase family M28.
  
     0.579
SEA97303.1
Imidazolonepropionase.
  
     0.536
SEA82365.1
Ketosteroid isomerase homolog.
  
     0.522
SEA97310.1
Imidazolonepropionase.
  
     0.514
SEA05597.1
N-acetyl-alpha-D-glucosaminyl L-malate synthase BshA.
       0.489
SEA27852.1
Aminopeptidase N.
  
 
  0.473
SEA89283.1
Ferritin; Iron-storage protein.
    
  0.427
SDZ93455.1
ATP-GRASP peptide maturase, grasp-with-spasm system.
  
  
  0.426
SEA83026.1
Peptidase S46; Catalyzes the removal of dipeptides from the N-terminus of oligopeptides.
 
  
 0.421
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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