STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA06791.1Peptidase family M28. (437 aa)    
Predicted Functional Partners:
SEA27852.1
Aminopeptidase N.
  
 
  0.669
SEA91268.1
Hypothetical protein.
  
 
  0.627
SEA76332.1
Dipeptidyl-peptidase-4.
 
    0.588
SEB05915.1
Hypothetical protein.
  
 
  0.550
SEA13004.1
Gamma-glutamyltranspeptidase / glutathione hydrolase.
  
  0.497
SEA54794.1
Predicted pyrophosphatase or phosphodiesterase, AlkP superfamily.
  
     0.474
SEA06807.1
Hypothetical protein.
       0.473
SEB02661.1
Gamma-glutamyltranspeptidase / glutathione hydrolase.
  
  0.466
ruvB
Holliday junction DNA helicase subunit RuvB; The RuvA-RuvB complex in the presence of ATP renatures cruciform structure in supercoiled DNA with palindromic sequence, indicating that it may promote strand exchange reactions in homologous recombination. RuvAB is a helicase that mediates the Holliday junction migration by localized denaturation and reannealing.
       0.453
SDZ92988.1
Uncharacterized conserved protein, DUF885 familyt.
  
     0.445
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.