STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA14821.1Outer membrane protein beta-barrel domain-containing protein. (196 aa)    
Predicted Functional Partners:
SEA30448.1
Periplasmic chaperone for outer membrane proteins Skp.
  
 
   0.553
SEA70388.1
WD40-like Beta Propeller Repeat.
   
 
 0.541
rpsU
Small subunit ribosomal protein S21; Belongs to the bacterial ribosomal protein bS21 family.
  
 
 
 0.532
SEA14803.1
Predicted dehydrogenase.
       0.508
SEA53069.1
Hypothetical protein.
  
     0.508
secA
Preprotein translocase subunit SecA; Part of the Sec protein translocase complex. Interacts with the SecYEG preprotein conducting channel. Has a central role in coupling the hydrolysis of ATP to the transfer of proteins into and across the cell membrane, serving as an ATP-driven molecular motor driving the stepwise translocation of polypeptide chains across the membrane; Belongs to the SecA family.
    
 
 0.507
rplY
Large subunit ribosomal protein L25; This is one of the proteins that binds to the 5S RNA in the ribosome where it forms part of the central protuberance. Belongs to the bacterial ribosomal protein bL25 family. CTC subfamily.
  
   0.498
SEA73742.1
OmpA family protein.
  
   0.497
SEA03302.1
Periplasmic chaperone for outer membrane proteins Skp.
    
   0.489
SEA03325.1
Periplasmic chaperone for outer membrane proteins Skp.
    
   0.489
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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