STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA20952.1Osmoprotectant transport system permease protein. (522 aa)    
Predicted Functional Partners:
SEA20971.1
Osmoprotectant transport system ATP-binding protein.
 0.999
SEA20983.1
Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide dehydrogenase (E3) component.
 
   
 0.875
SEA20929.1
Ergothioneine biosynthesis protein EgtB.
 
     0.815
SEA20892.1
Dimethylhistidine N-methyltransferase.
 
     0.791
SEA58627.1
Cystathionine beta-synthase.
    
  0.778
SDZ97628.1
HPP family protein.
    
  0.773
SEA03180.1
Hypothetical protein.
    
  0.773
SEA22603.1
H+/Cl-antiporter ClcA.
    
 0.750
SEA76436.1
Voltage gated chloride channel.
    
 0.750
SEA38053.1
Conserved hypothetical protein.
 
    0.693
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.