STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA28623.1Undecaprenyl-diphosphatase. (192 aa)    
Predicted Functional Partners:
SEA28610.1
Zinc transporter ZupT.
 
   0.838
SEA28645.1
Methyltransferase domain-containing protein.
       0.807
SEA28575.1
Putative hemolysin.
     
 0.736
SEA28666.1
Phosphoglycerol transferase MdoB.
     
 0.729
rplF
Large subunit ribosomal protein L6; This protein binds to the 23S rRNA, and is important in its secondary structure. It is located near the subunit interface in the base of the L7/L12 stalk, and near the tRNA binding site of the peptidyltransferase center; Belongs to the universal ribosomal protein uL6 family.
    
  0.622
SEA73441.1
RNA polymerase Rpb6.
  
 
   0.614
SEA63088.1
Signal peptidase II; This protein specifically catalyzes the removal of signal peptides from prolipoproteins.
 
  
  0.600
SEA91808.1
Histidine decarboxylase.
    
 0.592
SEB10456.1
Glutamate decarboxylase; Belongs to the group II decarboxylase family.
    
 0.592
SEA28683.1
Phosphomannomutase.
 
     0.567
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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