STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA55367.11-aminocyclopropane-1-carboxylate deaminase. (292 aa)    
Predicted Functional Partners:
SEA05113.1
2-oxoglutarate ferredoxin oxidoreductase subunit alpha.
     
 0.747
SEA55384.1
Hypothetical protein.
       0.734
SEA55352.1
Nucleotidyl transferase.
       0.579
SEA55334.1
Phosphotransferase enzyme family protein.
       0.527
SEA30996.1
Malate/lactate/ureidoglycolate dehydrogenase, LDH2 family; Belongs to the LDH2/MDH2 oxidoreductase family.
  
  
  0.516
SEB02484.1
HopJ type III effector protein.
  
     0.497
SEB07834.1
tRNA-(ms[2]io[6]A)-hydroxylase.
  
     0.439
SEB11577.1
TfoX N-terminal domain-containing protein.
    
  0.433
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.