Export your current network:
... as a bitmap image:
file format is 'PNG': portable network graphic
... as a high-resolution bitmap:
same PNG format, but at higher resolution
... as a vector graphic:
SVG: scalable vector graphic - can be opened and edited in Illustrator, CorelDraw, Dia, etc
... as short tabular text output:
TSV: tab separated values - can be opened in Excel and Cytoscape (lists only one-way edges: A-B)
... as tabular text output:
TSV: tab separated values - can be opened in Excel (lists reciprocal edges: A-B,B-A)
... as an XML summary:
structured XML interaction data, according to the 'PSI-MI' data standard
... protein node degrees:
node degree of proteins in your network (given the current score cut-off)
... network coordinates:
a flat-file format describing the coordinates and colors of nodes in the network
... protein sequences:
MFA: multi-fasta format - containing the aminoacid sequences in the network
... protein annotations:
a tab-delimited file describing the names, domains and descriptions of proteins in your network
... functional annotations:
a tab-delimited file containing all known functional terms of protiens in your network
Browse interactions in tabular form:
node1 | node2 | node1 accession | node2 accession | node1 annotation | node2 annotation | score |
SDZ90158.1 | SEA14470.1 | SAMN05660909_00048 | SAMN05660909_00944 | AraC-type DNA-binding protein. | AraC-type DNA-binding protein. | 0.514 |
SDZ90158.1 | SEA38093.1 | SAMN05660909_00048 | SAMN05660909_01710 | AraC-type DNA-binding protein. | Helix-turn-helix domain-containing protein. | 0.649 |
SDZ90158.1 | SEA62825.1 | SAMN05660909_00048 | SAMN05660909_02734 | AraC-type DNA-binding protein. | Helix-turn-helix domain-containing protein. | 0.670 |
SDZ90158.1 | SEA81670.1 | SAMN05660909_00048 | SAMN05660909_03565 | AraC-type DNA-binding protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.587 |
SDZ90158.1 | SEA98942.1 | SAMN05660909_00048 | SAMN05660909_04554 | AraC-type DNA-binding protein. | AraC-type DNA-binding protein. | 0.482 |
SDZ90158.1 | SEB03617.1 | SAMN05660909_00048 | SAMN05660909_04883 | AraC-type DNA-binding protein. | AraC-type DNA-binding protein. | 0.465 |
SDZ90158.1 | rpoA | SAMN05660909_00048 | SAMN05660909_01538 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.459 |
SEA14470.1 | SDZ90158.1 | SAMN05660909_00944 | SAMN05660909_00048 | AraC-type DNA-binding protein. | AraC-type DNA-binding protein. | 0.514 |
SEA14470.1 | SEA38093.1 | SAMN05660909_00944 | SAMN05660909_01710 | AraC-type DNA-binding protein. | Helix-turn-helix domain-containing protein. | 0.614 |
SEA14470.1 | SEA62825.1 | SAMN05660909_00944 | SAMN05660909_02734 | AraC-type DNA-binding protein. | Helix-turn-helix domain-containing protein. | 0.471 |
SEA14470.1 | SEA81670.1 | SAMN05660909_00944 | SAMN05660909_03565 | AraC-type DNA-binding protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.587 |
SEA14470.1 | rpoA | SAMN05660909_00944 | SAMN05660909_01538 | AraC-type DNA-binding protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.459 |
SEA38093.1 | SDZ90158.1 | SAMN05660909_01710 | SAMN05660909_00048 | Helix-turn-helix domain-containing protein. | AraC-type DNA-binding protein. | 0.649 |
SEA38093.1 | SEA14470.1 | SAMN05660909_01710 | SAMN05660909_00944 | Helix-turn-helix domain-containing protein. | AraC-type DNA-binding protein. | 0.614 |
SEA38093.1 | SEA62825.1 | SAMN05660909_01710 | SAMN05660909_02734 | Helix-turn-helix domain-containing protein. | Helix-turn-helix domain-containing protein. | 0.654 |
SEA38093.1 | SEA81670.1 | SAMN05660909_01710 | SAMN05660909_03565 | Helix-turn-helix domain-containing protein. | Glutamate synthase (NADPH/NADH) large chain. | 0.587 |
SEA38093.1 | SEB03617.1 | SAMN05660909_01710 | SAMN05660909_04883 | Helix-turn-helix domain-containing protein. | AraC-type DNA-binding protein. | 0.619 |
SEA38093.1 | rpoA | SAMN05660909_01710 | SAMN05660909_01538 | Helix-turn-helix domain-containing protein. | DNA-directed RNA polymerase subunit alpha; DNA-dependent RNA polymerase catalyzes the transcription of DNA into RNA using the four ribonucleoside triphosphates as substrates. | 0.459 |
SEA62777.1 | SEA62802.1 | SAMN05660909_02732 | SAMN05660909_02733 | Hypothetical protein. | NADPH:quinone reductase. | 0.493 |
SEA62777.1 | SEA62825.1 | SAMN05660909_02732 | SAMN05660909_02734 | Hypothetical protein. | Helix-turn-helix domain-containing protein. | 0.493 |
page 1 of 3