STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA67980.1TonB-linked outer membrane protein, SusC/RagA family. (1024 aa)    
Predicted Functional Partners:
SEA67968.1
Starch-binding associating with outer membrane.
 
 
   0.940
SEA46021.1
Starch-binding associating with outer membrane.
  
 
   0.814
SEA40441.1
Starch-binding associating with outer membrane.
  
 
   0.788
SEA98144.1
Starch-binding associating with outer membrane.
  
 
   0.786
SEA44974.1
Starch-binding associating with outer membrane.
  
 
   0.785
SEA24392.1
Starch-binding associating with outer membrane.
  
 
   0.781
SEA93764.1
Starch-binding associating with outer membrane.
  
 
   0.763
SDZ90806.1
Starch-binding associating with outer membrane.
  
     0.753
SEA50459.1
Starch-binding associating with outer membrane.
  
 
   0.752
SEA88112.1
Starch-binding associating with outer membrane.
  
 
   0.750
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
Server load: low (16%) [HD]
STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.