STRINGSTRING
STRING protein interaction network
Nodes:
Network nodes represent proteins
splice isoforms or post-translational modifications are collapsed, i.e. each node represents all the proteins produced by a single, protein-coding gene locus.
Node Color
colored nodes:
query proteins and first shell of interactors
white nodes:
second shell of interactors
Node Content
empty nodes:
proteins of unknown 3D structure
filled nodes:
a 3D structure is known or predicted
Edges:
Edges represent protein-protein associations
associations are meant to be specific and meaningful, i.e. proteins jointly contribute to a shared function; this does not necessarily mean they are physically binding to each other.
Known Interactions
from curated databases
experimentally determined
Predicted Interactions
gene neighborhood
gene fusions
gene co-occurrence
Others
textmining
co-expression
protein homology
Your Input:
Neighborhood
Gene Fusion
Cooccurrence
Coexpression
Experiments
Databases
Textmining
[Homology]
Score
SEA75256.1Serine/threonine-protein kinase HipA. (416 aa)    
Predicted Functional Partners:
SEA75271.1
Helix-turn-helix domain-containing protein.
 
 
 0.980
SEA59319.1
Helix-turn-helix domain-containing protein.
 
 
 
 0.915
SEB05807.1
Hypothetical protein.
   
 
 0.904
SEB12614.1
Transcriptional regulator, contains XRE-family HTH domain.
 
 
 0.660
SEA04383.1
Transcriptional regulator, XRE family with cupin sensor.
  
 
 0.638
SEA15059.1
DNA-binding transcriptional regulator, XRE-family HTH domain.
  
 
 0.615
SEA55869.1
Transcriptional regulator, contains XRE-family HTH domain.
  
 
 0.615
SEA59458.1
Helix-turn-helix.
  
 
 0.615
SEA85895.1
DNA-binding transcriptional regulator, XRE family.
  
 
 0.615
SEA98289.1
Helix-turn-helix domain-containing protein.
  
 
 0.615
Your Current Organism:
Chitinophaga terrae
NCBI taxonomy Id: 408074
Other names: C. terrae Kim and Jung 2007, CIP 109744, Chitinophaga sp. KP01, Chitinophaga terrae Kim and Jung 2007, DSM 23920, KCTC 12836, LMG 24015, LMG:24015, strain KP01
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STRING is a Core Data Resource as designated by Global Biodata Coalition and ELIXIR.